archiDART v3.0, A new data analysis pipeline allowing the topological analysis of plant root systems
Delory B
Li M
Topp C and Lobet G
F1000 Research
2018
root
data analysis
Publisher
PDF
Recovering root system traits using image analysis exemplified by two-dimensional neutron radiography images of lupine
Leitner D
Felderer B
Vontobel P
Schnepf A
Plant Physiol
2014
root
image analysis
Publisher
PDF
A dynamic root system growth model based on L-Systems
Leitner D
Klepsch S
Bodner G
Schnepf A
Plant Soil
2010
root
model
Publisher
PDF
A dynamic model of nutrient uptake by root hairs
Leitner D
Klepsch S
Ptashnyk M
Marchant A
Kirk GJ
Schnepf A
Roose T
New Phytol.
2010
model
root
nutrient
Publisher
PDF
L-System model for the growth of arbuscular mycorrhizal fungi, both within and outside of their host roots
Schnepf A
Leitner D
Schweiger PF
Scholl P
Jansa J
00
2016
root
model
mycorrhizae
Publisher
PDF
Effect of Root Water and Solute Uptake on Apparent Soil Dispersivity: A Simulation Study
Schröder N
Javaux M
Vanderborght J
Steffen B
Vereecken H
Vadose Zone J.
2012
water
solute
root
model
Publisher
PDF
A simple three-dimensional macroscopic root water uptake model based on the hydraulic architecture approach
Couvreur V
Vanderborght J
Javaux M
Hydrol. Earth Syst. Sci.
2012
root
water
model
Publisher
PDF
Dynamic aspects of soil water availability for isohydric plants: Focus on root hydraulic resistances
Couvreur V
Vanderborght J
Draye X
Javaux M
Water Resour. Res.
2014
root
model
water
Publisher
PDF
Exploring Osmotic Stress and Differences between Soil–Root Interface and Bulk Salinities
Jorda H
Perelman A
Lazarovitch N
Vanderborght J
Vadose Zone Journal
2017
root
salinity
Publisher
PDF
A hybrid analytical-numerical method for solving water flow equations in root hydraulic architectures
Meunier F
Draye X
Vanderborght J
Javaux M
Couvreur V
Appl. Math. Model.
2017
root
water
modelling
Publisher
PDF
Horizontal soil water potential heterogeneity: simplifying approaches for crop water dynamics models
Couvreur V
Vanderborght J
Beff L
Javaux M
Hydrol. Earth Syst. Sci. Discuss.
2014
root
soil
water
modelling
Publisher
PDF
The impact of mucilage on root water uptake—A numerical study
Schwartz N
Carminati A
Javaux M
Water Resources Research
2016
root
water
mucillage
Publisher
PDF
Measuring and Modeling Hydraulic Lift of Using Stable Water Isotopes
Meunier F
Rothfuss Y
Bariac T
Biron P
Richard P
Durand JL
Couvreur V
Vanderborght J
Javaux M
Vadose Zone J.
2017
water
isotope
Publisher
PDF
Root Water Uptake and Ideotypes of the Root System: Whole-Plant Controls Matter
Tardieu F
Draye X
Javaux M
Vadose Zone J.
2017
water
root
ideotype
Publisher
PDF
Towards quantitative root hydraulic phenotyping: novel mathematical functions to calculate plant-scale hydraulic parameters from root system functional and structural traits
Meunier F
Couvreur V
Draye X
Vanderborght J
Javaux M
J. Math. Biol.
2017
root
ideotype
water
Publisher
PDF
A new model for root growth in soil with macropores
Landl M
Huber K
Schnepf A
Vanderborght J
Javaux M
Bengough G
Vereecken H
Plant and soil
2017
root
soil
macropores
Publisher
PDF
Modelling the impact of heterogeneous rootzone water distribution on the regulation of transpiration by hormone transport and/or hydraulic pressures
Huber
K.
Vanderborght
J.
Javaux
M.
Schröder
N.
Dodd
I. C.
& Vereecken
H
Plant and Soil
2014
root
aba
modelling
Publisher
PDF
Impact of contrasted maize root traits at flowering on water stress tolerance
Leitner D
Meunier F
Bodner G
Javaux M
Schnepf A
Field Crop Research
2014
root
modelling
flowering
Publisher
PDF
Teaching Tools in Plant Biology: Phenomics of root system architecture
York L
Lobet G
Plant Cell
2017
root
phenotyping
Publisher
PDF
Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large scale genetic studies
Atkinson J*
Lobet G*
Noll M
Meyer P
Griffiths M
Wells D
GigaScience
2017
root
image analysis
machine learning
Publisher
PDF
Novel multiscale insights into the composite nature of water transport in roots
Couvreur V
Faget M
Lobet G
Javaux M
Chaumont F
Draye X
biorxiv
2017
root
modelling
water
Publisher
PDF
Image analysis in plant sciences: Publish then Perish
Lobet G
Trends in Plant Science
2017
plant
image analysis
open science
Publisher
PDF
CRootBox: A Structural-Functional Modelling Framework For Root Systems
Schnepf A
Leitner D
Landl M
Lobet G
Hieu Mai T
Morandage S
Sheng C
Zorner M
Vanderborght J
Vereecken H
biorxiv
2017
root
modelling
Publisher
PDF
An evaluation of inexpensive methods for root image acquisition when using rhizotrons
Mohamed A
Monnier Y
Mao Z
Lobet G
Maeght J-L
Ramel M
Stokes A
Plant Methods
2017
root
phenotyping
Publisher
PDF
Using a structural root system model for an in-depth assessment of root image analysis pipeline
Lobet G*
Koevoets I T*
Noll M*
Meyer P
Tocquin P
Pagès L
Périlleux C
Frontiers in Plant Sciences
2017
image analysis
modelling
Publisher
PDF
Library of simulated root images, with degradations
Lobet G
Koevoet T I
Noll M
Tocquin P
Meyer P E
Pagès L
Périlleux C
Zenodo
2016
root
modelling
database
Publisher
Rhizotron Holder
Lobet G
figshare
2016
root
phenotyping
Publisher
Root phenotyping data
Bouché F
D Alioa M
Tocquin P
Lobet G
Detry N
Périlleux C
Zenodo
2016
root
rsml
Publisher
Environmental Control of Root System Biology
Rellan-Alvarez R*
Lobet G*
Dinneny J
Annual Reviews in Plant Biology
2016
root
modelling
Publisher
PubMed
PDF
Maize root emergence
Lobet G
2015
root
Publisher
FLOR-ID, an interactive database of flowering-time gene networks in Arabidopsis thaliana
Bouché F*
Lobet G*
Tocquin P and Périlleux C
Nucleic Acid Research
2016
flowering
database
Publisher
PubMed
archiDART, an R package for the automated 2D computation of plant root architectural traits
Delory B
Baudson C
Brostaux Y
Lobet G
du Jardin P
Pagès L and Delaplace P
Plant and Soil
2015
data analysis
root
Publisher
PDF
Model-assisted integration of physiological and environmental constraints affecting the dynamic and spatial patterns of root water uptake from soils
Draye X
Kim YX
Lobet G and Javaux M
Journal of Experimental Botany
2010
root
water
modelling
Publisher
PubMed
GLO-Roots, an imaging platform enabling multidimensional characterization of soil grown root systems
Rellán-Álvarez R
Lobet G
Hildner H
Pradier PL
Sebastian J
Yee C
Yu G
LaRue T
Trontin C
Nieu R
Vogel J and Dinneny J
eLife
2015
root
phenotyping
Publisher
PubMed
Root System Markup Language. Toward an unified root architecture description language
Lobet G*
Pound MP*
Diener J*
Pradal C*
Draye X
Godin C
Javaux M
Leitner D
Meunier F
Nacry P
Pridmore TP
Schnepf A
Plant Physiology
2015
root
image analysis
modelling
data analysis
Publisher
PubMed
Rhizoponics, a novel hydroponic rhizotron for root system analyses on mature Arabidopsis thaliana plants
Mathieu L*
Lobet G*
Tocquin P and Périlleux C
Plant Methods
2015
root
shoot
phenotyping
Publisher
PubMed
Plant Water Uptake in Drying Soils
Lobet G
Couvreur C
Meunier F
Javaux M
Draye X
Plant Physiology
2014
root
water
Publisher
PubMed
Inflorescence architecture in tomato genes functions within a zigzag model
Périlleux C*
Lobet G* and Tocquin P
Frontiers in Plant Sciences
2014
flowering
modelling
tomato
Publisher
PubMed
A modeling approach to determine the importance of dynamic regulation of plant hydraulic conductivities on the water uptake dynamics in the soil-plant-atmosphere system
Lobet G
Pagès P and Draye X
Ecological Modeling
2014
root
water
modelling
Publisher
PDF
An online database for plant image analysis software tools
Lobet G
Draye X and Périlleux C
Plant Methods
2013
database
image analysis
Publisher
PubMed
Root Systems Biology. Bridging regulatory networks to rhizosphere-scale processes
Hill K
Porco S
Lobet G
Zappala S
Mooney S
Draye X and Bennett MJ
Plant Physiology
2013
root
modelling
Publisher
PubMed
Rhizotron blueprints
Lobet G
Draye X
figshare
2012
root
phenotyping
Publisher
Novel scanning procedure enabling the vectorization of entire rhizotron-grown root systems
Lobet G and Draye X
Plant Methods
2013
root
phenotyping
Publisher
PubMed
Regulation of water flow in the soil-root domain. New tools and methods.
Lobet G
Université catholique de Louvain
2012
Publisher
A Novel Image Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture
Lobet G
Pagès L and Draye X
Plant Physiology
2011
root
image analysis
Publisher
PubMed
Root water uptake and water flow in the soil-root domain
Lobet G
Hachez C
Chaumont F
Javaux M and Draye X
Plant Roots, The Hidden Half, 4h edition,
2013
root
water
PDF
Macropore effects on phosphorus acquisition by wheat roots – a rhizotron study
S. L. Bauke
M. Landl
M. Koch
D. Hofmann
K. A. Nagel
N. Siebers
A. Schnepf
W. Amelung
Plant and Soil
2017
biopores
Publisher
PDF